OBO Foundry dashboard analysis

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/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           174
OWL/XML Syntax             4
RDF/XML                    2
unknown                    1
OWL Functional Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	181	149846.906593	794623.261353	0.0	1408.50	7125.5	28479.75	9748858.0
Declaration	181	28238.280220	184970.569844	0.0	418.25	1265.0	5259.75	2387710.0
SubClassOf	176	38335.236264	210254.549908	0.0	323.25	1239.5	6542.25	2387681.0
EquivalentClasses	125	2694.774725	13617.225586	0.0	0.00	25.0	205.00	126209.0
TransitiveObjectProperty	117	6.620879	11.515745	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	115	8.664835	18.026462	0.0	0.00	2.0	7.00	120.0
SubObjectPropertyOf	107	76.280220	453.268368	0.0	0.00	2.0	49.00	6017.0
DisjointClasses	96	30.379121	90.050902	0.0	0.00	1.0	21.00	610.0
ObjectPropertyRange	87	47.730769	445.647420	0.0	0.00	0.0	19.75	6016.0
ObjectPropertyDomain	87	48.093407	445.664427	0.0	0.00	0.0	19.00	6016.0
InverseObjectProperties	84	26.247253	222.745325	0.0	0.00	0.0	15.00	3005.0
SubPropertyChainOf	70	10.483516	26.875758	0.0	0.00	0.0	2.00	148.0
ClassAssertion	61	72.060440	464.710367	0.0	0.00	0.0	17.00	5528.0
FunctionalObjectProperty	51	11.813187	148.198121	0.0	0.00	0.0	1.00	2000.0
SymmetricObjectProperty	47	1.642857	8.328804	0.0	0.00	0.0	1.00	79.0
DataPropertyRange	42	12.082418	149.242614	0.0	0.00	0.0	0.00	2014.0
IrrefexiveObjectProperty	38	0.620879	2.330249	0.0	0.00	0.0	0.00	26.0
DataPropertyDomain	36	12.005495	149.247819	0.0	0.00	0.0	0.00	2014.0
DifferentIndividuals	34	0.681319	4.203075	0.0	0.00	0.0	0.00	56.0
AnnotationPropertyRangeOf	33	1.456044	10.074624	0.0	0.00	0.0	0.00	129.0
EquivalentObjectProperties	28	1.412088	5.395974	0.0	0.00	0.0	0.00	36.0
SubDataPropertyOf	27	11.681319	149.269964	0.0	0.00	0.0	0.00	2014.0
FunctionalDataProperty	22	0.467033	1.522034	0.0	0.00	0.0	0.00	11.0
Rule	22	1.829670	5.878944	0.0	0.00	0.0	0.00	29.0
InverseFunctionalObjectProperty	22	0.181319	0.571015	0.0	0.00	0.0	0.00	4.0
AsymmetricObjectProperty	21	33.461538	445.835966	0.0	0.00	0.0	0.00	6015.0
DisjointObjectProperties	17	0.236264	1.129320	0.0	0.00	0.0	0.00	10.0
ObjectPropertyAssertion	13	5.873626	56.084392	0.0	0.00	0.0	0.00	747.0
ReflexiveObjectProperty	11	0.109890	0.503042	0.0	0.00	0.0	0.00	4.0
AnnotationPropertyDomain	11	0.269231	1.614519	0.0	0.00	0.0	0.00	17.0
DisjointUnion	7	0.087912	0.559170	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.576923	5.772110	0.0	0.00	0.0	0.00	75.0
DatatypeDefinition	2	0.109890	1.409914	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005495	0.074125	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	180	117478.521978	620044.925255	0.0	1352.00	5233.0	19854.00	7163045.0
ObjectSomeValuesFrom	161	17870.818681	86497.978312	0.0	37.25	451.5	2856.75	824892.0
ObjectIntersectionOf	121	4452.631868	20789.021503	0.0	0.00	31.0	382.50	201843.0
ObjectUnionOf	88	27.576923	89.256054	0.0	0.00	0.0	17.75	767.0
ObjectAllValuesFrom	74	29.318681	147.979757	0.0	0.00	0.0	11.75	1764.0
ObjectComplementOf	66	13.230769	81.759123	0.0	0.00	0.0	2.75	1058.0
ObjectMinCardinality	59	2.285714	7.403576	0.0	0.00	0.0	1.00	57.0
ObjectExactCardinality	48	9.313187	88.771018	0.0	0.00	0.0	1.00	1193.0
ObjectOneOf	44	5.170330	34.539410	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	24	0.230769	0.674343	0.0	0.00	0.0	0.00	4.0
ObjectMaxCardinality	22	0.901099	4.775756	0.0	0.00	0.0	0.00	45.0
DataExactCardinality	22	0.532967	1.634068	0.0	0.00	0.0	0.00	7.0
DataSomeValuesFrom	22	6.994505	64.631424	0.0	0.00	0.0	0.00	859.0
ObjectHasValue	19	138.000000	1584.790793	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	18	0.247253	0.980116	0.0	0.00	0.0	0.00	6.0
DataHasValue	17	120.302198	1577.840990	0.0	0.00	0.0	0.00	21288.0
DataAllValuesFrom	3	0.104396	1.032661	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.010989	0.104539	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
121	omo	0.947	0.938	0.956
7	bfo	0.827	0.883	0.770
149	ro	0.799	0.863	0.736
133	pato	0.719	0.982	0.456
64	go	0.671	0.847	0.495
19	cl	0.602	0.928	0.275
144	pr	0.575	0.926	0.224
111	obi	0.569	0.727	0.410
103	ncbitaxon	0.557	0.743	0.372
165	uberon	0.534	0.705	0.363
34	doid	0.529	0.939	0.120
114	ogms	0.516	0.796	0.236
13	chebi	0.504	0.586	0.423
69	hp	0.503	0.885	0.121
172	wbls	0.500	0.989	0.011
35	dpo	0.493	0.986	0.000
162	trans	0.487	0.948	0.027
139	plana	0.485	0.966	0.005
129	opl	0.483	0.950	0.016
112	obib	0.480	0.944	0.016
10	caro	0.479	0.734	0.224
43	envo	0.478	0.780	0.175
51	fbdv	0.477	0.937	0.016
63	gno	0.477	0.949	0.005
39	eco	0.474	0.943	0.005
138	phipo	0.471	0.936	0.005
59	gecko	0.470	0.940	0.000
178	zeco	0.468	0.935	0.000
73	iao	0.467	0.934	0.000
159	symp	0.466	0.888	0.044
66	hancestro	0.462	0.908	0.016
134	pco	0.455	0.795	0.115
173	wbphenotype	0.451	0.891	0.011
126	ontoavida	0.450	0.899	0.000
31	ddpheno	0.449	0.893	0.005
123	omrse	0.449	0.804	0.093
44	epio	0.447	0.894	0.000
100	mro	0.445	0.889	0.000
12	cdno	0.445	0.890	0.000
97	mp	0.441	0.848	0.033
8	bspo	0.441	0.789	0.093
76	ido	0.441	0.766	0.115
181	zp	0.438	0.864	0.011
179	zfa	0.435	0.848	0.022
166	uo	0.434	0.703	0.165
41	ecto	0.432	0.860	0.005
45	eupath	0.432	0.853	0.011
75	ico	0.432	0.838	0.027
141	po	0.430	0.768	0.093
1	aism	0.429	0.842	0.016
140	planp	0.425	0.846	0.005
158	swo	0.424	0.844	0.005
151	rxno	0.424	0.844	0.005
58	fypo	0.422	0.845	0.000
145	psdo	0.421	0.843	0.000
25	colao	0.421	0.842	0.000
33	disdriv	0.420	0.840	0.000
170	vto	0.419	0.839	0.000
6	bco	0.416	0.827	0.005
131	ornaseq	0.416	0.832	0.000
102	nbo	0.414	0.736	0.093
155	so	0.414	0.680	0.148
177	xpo	0.410	0.815	0.005
85	mf	0.410	0.792	0.027
16	chmo	0.409	0.769	0.049
46	exo	0.407	0.791	0.022
47	fao	0.406	0.795	0.016
148	rbo	0.405	0.804	0.005
37	duo	0.404	0.791	0.016
174	xao	0.404	0.792	0.016
95	mondo	0.403	0.773	0.033
109	oba	0.402	0.781	0.022
4	apollo_sv	0.401	0.710	0.093
40	ecocore	0.401	0.790	0.011
38	ecao	0.400	0.800	0.000
175	xco	0.398	0.784	0.011
128	oostt	0.398	0.784	0.011
0	agro	0.398	0.790	0.005
108	oarcs	0.397	0.793	0.000
99	mpio	0.397	0.788	0.005
157	stato	0.396	0.715	0.077
146	pso	0.396	0.792	0.000
22	clyh	0.395	0.789	0.000
50	fbcv	0.395	0.768	0.022
26	cro	0.394	0.788	0.000
57	fovt	0.393	0.786	0.000
20	clao	0.393	0.785	0.000
118	ohpi	0.392	0.783	0.000
143	ppo	0.392	0.784	0.000
167	upheno	0.390	0.742	0.038
117	ohmi	0.390	0.774	0.005
62	geo	0.389	0.734	0.044
80	lepao	0.388	0.776	0.000
70	hsapdv	0.387	0.747	0.027
110	obcs	0.382	0.741	0.022
61	geno	0.381	0.751	0.011
137	peco	0.380	0.727	0.033
2	amphx	0.380	0.760	0.000
96	mop	0.378	0.739	0.016
125	ons	0.375	0.728	0.022
160	taxrank	0.374	0.738	0.011
18	cio	0.374	0.748	0.000
78	kisao	0.374	0.748	0.000
68	hom	0.374	0.748	0.000
14	cheminf	0.374	0.749	0.000
171	wbbt	0.374	0.738	0.011
15	chiro	0.374	0.748	0.000
136	pdumdv	0.374	0.748	0.000
82	mamo	0.374	0.748	0.000
152	sbo	0.374	0.748	0.000
55	fobi	0.373	0.747	0.000
98	mpath	0.373	0.714	0.033
77	ino	0.373	0.730	0.016
124	one	0.373	0.746	0.000
36	dron	0.373	0.664	0.082
30	ddanat	0.373	0.742	0.005
169	vt	0.373	0.730	0.016
54	fma	0.373	0.692	0.055
72	htn	0.373	0.746	0.000
87	mfoem	0.372	0.744	0.000
88	mfomd	0.372	0.733	0.011
49	fbbt	0.371	0.720	0.022
32	dideo	0.371	0.732	0.011
28	cto	0.370	0.740	0.000
42	emapa	0.370	0.735	0.005
180	zfs	0.370	0.736	0.005
52	fideo	0.370	0.740	0.000
154	sepio	0.369	0.734	0.005
119	olatdv	0.369	0.738	0.000
115	ogsf	0.369	0.739	0.000
84	mco	0.368	0.737	0.000
90	miapa	0.368	0.736	0.000
3	apo	0.368	0.736	0.000
83	maxo	0.368	0.721	0.016
130	opmi	0.367	0.708	0.027
93	mmusdv	0.367	0.735	0.000
142	poro	0.366	0.732	0.000
92	mmo	0.366	0.727	0.005
116	ohd	0.365	0.731	0.000
107	oae	0.365	0.642	0.088
132	ovae	0.364	0.729	0.000
156	spd	0.364	0.729	0.000
161	to	0.364	0.723	0.005
27	cteno	0.364	0.728	0.000
86	mfmo	0.363	0.726	0.000
71	hso	0.360	0.721	0.000
11	cdao	0.359	0.713	0.005
23	cmo	0.357	0.675	0.038
29	cvdo	0.356	0.702	0.011
79	labo	0.356	0.713	0.000
104	ncit	0.354	0.588	0.121
122	omp	0.353	0.684	0.022
147	pw	0.353	0.695	0.011
24	cob	0.352	0.689	0.016
105	ncro	0.351	0.692	0.011
60	genepio	0.349	0.665	0.033
89	mi	0.349	0.682	0.016
106	nomen	0.348	0.697	0.000
81	ma	0.346	0.693	0.000
48	fbbi	0.344	0.687	0.000
164	txpo	0.344	0.689	0.000
120	omit	0.343	0.664	0.022
163	tto	0.342	0.684	0.000
67	hao	0.341	0.681	0.000
9	bto	0.338	0.649	0.027
150	rs	0.337	0.669	0.005
135	pdro	0.334	0.645	0.022
91	micro	0.332	0.658	0.005
56	foodon	0.328	0.580	0.077
74	iceo	0.328	0.655	0.000
65	gsso	0.324	0.637	0.011
168	vo	0.324	0.571	0.077
5	aro	0.321	0.620	0.022
127	ontoneo	0.321	0.641	0.000
113	ogg	0.318	0.587	0.049
53	flopo	0.318	0.630	0.005
153	scdo	0.317	0.633	0.000
21	clo	0.316	0.577	0.055
101	ms	0.311	0.611	0.011
17	cido	0.302	0.599	0.005
94	mod	0.298	0.586	0.011
176	xlmod	0.000	0.000	0.000

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	182.0	0.407571	0.091022	0.0	0.36625	0.3895	0.43200	0.947
score_dash	182.0	0.763643	0.108802	0.0	0.71425	0.7475	0.83075	0.989
score_impact	182.0	0.051533	0.131535	0.0	0.00000	0.0110	0.02700	0.956

OBO dependency graph